id stringlengths 7 14 | text stringlengths 1 37.2k |
|---|---|
2213380_0 | public double calculateRisk(double baselineSurvival) {
return calculateRisk(baselineSurvival, linearPredictor());
} |
2221963_20 | public void h3() {
delegate.h3();
} |
2254694_7 | public Converter<?> getConverter(Class<?> type, Annotation[] annotations) {
for (ConverterFactory factory : factories) {
Converter<?> converter = factory.createConverter(type, annotations);
if (converter != null) {
return converter;
}
}
throw new NoConverterException(typ... |
2259237_53 | protected void populateServiceAlerts(Set<String> serviceAlertDescriptions, List<ServiceAlertBean> serviceAlertBeans) {
populateServiceAlerts(serviceAlertDescriptions, serviceAlertBeans, true);
} |
2271327_0 | public static LoadableDetachableModel loadedModel(final Object bean,
final String loadMethod)
{
// assert that method exists
ReflectUtils.getZeroArgMethod(bean.getClass(), loadMethod);
return new LoadableDetachableModel() {
@Override protected O... |
2272670_4 | @Factory
public static Matcher<Object> isApproved() throws IOException {
final StackTraceElement trace = StackUtils
.getCallingTestMethodStackTraceElement();
final String methodName = trace.getMethodName();
final String className = getClassName(trace);
final Class<?> clazz = getClassObject(t... |
2287347_24 | public List<AggregatedSegment> aggregateSegments(List<? extends ConnectableSegment> segments) {
List<AggregatedSegment> aggregatedSegments = new ArrayList<AggregatedSegment>();
for (Iterator<? extends ConnectableSegment> it = segments.iterator(); it.hasNext();) {
ConnectableSegment segment = it.next();
Aggregate... |
2293442_5 | public static String toOID(UUID uuid) {
return toOID(uuid, OID_ROOT);
} |
2296450_8 | static void populateDataIndexFromAnnotations(final AnnotationData data,
final Class expectedAnnotationClass,
final Method targetMethod)
throws NoSuchMethodException, IllegalAccessException, InvocationTargetException {
if (!UPDATES.c... |
2304277_106 | public static String getMetadataInstance(final String metadataId) {
if (isIdentifyingInstance(metadataId)) {
return metadataId.substring(metadataId.indexOf(INSTANCE_DELIMITER) + 1);
}
return null;
} |
2306348_0 | public String sayHello( String who )
{
return "Hello " + who;
} |
2306900_3 | @Override
public List<String> getAddressesForApplication(String jid) {
return delegateStore.getAddressesForApplication(jid);
} |
2311431_0 | public final int orientation(Vertex a, Vertex b, Vertex c) {
double result = Geometry.leftOfPlane(a.x, a.y, a.z, b.x, b.y, b.z, c.x,
c.y, c.z, x, y, z);
if (result > 0.0) {
return 1;
} else if (result < 0.0) {
return -1;
}
return 0;
} |
2316136_86 | public AggregationType getAggregateType() {
return aggregateType;
} |
2316191_151 | public SerializedResultSet doPreview( String connectionName, String query, String previewLimit )
throws DatasourceServiceException {
if ( !hasDataAccessPermission() ) {
logger.error( Messages.getErrorString( "DatasourceServiceImpl.ERROR_0001_PERMISSION_DENIED" ) ); //$NON-NLS-1$
throw new DatasourceServiceE... |
2316200_293 | public void closeChangePasswordDialog() {
zkHelper.findComponent(CHANGE_PASSWORD_DIALOG).detach();
} |
2316202_113 | public Integer getNewPmCountFor(String username) {
Element cacheElementForUser = userDataCache.get(username);
if (cacheElementForUser == null) {
return null;
}
return (Integer) cacheElementForUser.getValue();
} |
2335594_25 | public CheckStylePluginException wrap(@Nullable final String message, @NotNull final Throwable error) {
final Throwable root = rootOrCheckStyleException(error);
final String exMessage = ofNullable(message).orElseGet(root::getMessage);
if (isParseException(root)) {
return new CheckStylePluginParseEx... |
2341027_0 | @Override
public int readTo(DecoderAdapter dest, String encoded, MessageParamField field ) {
int decodedValue = IntegerEncoded.parseInt(encoded, radix);
dest.putInt(field.dbFieldName, decodedValue);
return 1;
} |
2349183_21 | public static TaskId toTaskID(String tid) {
Iterator<String> it = _split(tid).iterator();
return toTaskID(TASK, tid, it);
} |
2349728_0 | public static Repository eventRepoToRepo(GitHubEvent.RepoIdentifier repo) {
String[] ref = repo.repoWithUserName().split("/");
return InfoUtils.createRepoFromData(ref[0], ref[1]);
} |
2357859_654 | @Override
public void filter(DocumentIndexingPackage dip) throws IndexingException {
log.debug("Performing set access status filter on {}", dip.getPid());
dip.getDocument().setStatus(determineAccessStatus(dip));
} |
2364987_147 | @Override
public void orFallBackTo(Runnable defaultClosure) {
defaultClosure.run();
} |
2383782_393 | public String parse(Element root) {
return parseWithName(root, null);
} |
2389245_26 | public static void renameCascadingParentLinks(final String oldName, final String newName) throws IOException {
if (StringUtils.isBlank(newName) || StringUtils.isBlank(oldName)) {
return;
}
for (Job job : Hudson.getInstance().getAllItems(Job.class)) {
if (oldName.equals(job.getCascadingProjec... |
2394379_79 | @Override
public boolean matches(Document document, Document query) {
for (String key : query.keySet()) {
Object queryValue = query.get(key);
validateQueryValue(queryValue, key);
if (!checkMatch(queryValue, key, document)) {
return false;
}
}
return true;
} |
2397476_0 | public DateTime getValue()
{
return value;
} |
2403733_3 | public PromoteKeyResult execute(long masterKeyId, byte[] cardAid, long[] subKeyIds) {
OperationLog log = new OperationLog();
log.add(LogType.MSG_PR, 0);
// Perform actual type change
UncachedKeyRing promotedRing;
{
try {
log.add(LogType.MSG_PR_FETCHING, 1,
... |
2408915_45 | public int getResourceId(Context context) {
int resourceId = context.getResources().getIdentifier(
resourceName, resourceType, hasResourcePackage() ? resourcePackage : context.getPackageName());
checkResource(resourceId);
return resourceId;
} |
2416378_14 | public boolean inherits(ASTType astType, ASTType inheritable) {
if (astType == null) {
return false;
}
if(inheritable == null || inheritable.equals(OBJECT_TYPE)){
return true;
}
if (astType.equals(inheritable)) {
return true;
}
for (ASTType typeInterfaces : astType.ge... |
2422006_24 | public void shutdown() {
keepRunning = false;
thread.interrupt();
try {
thread.join();
} catch (InterruptedException e) {
logger.error("Error shutting down thread with hook", e);
}
} |
2425139_0 | @Name("insert")
@Description("Insert Geoff subgraph into the database from a list of rule strings")
@PluginTarget(GraphDatabaseService.class)
public Representation insert(
@Source GraphDatabaseService graphDB,
@Description("Geoff subgraph to insert")
@Parameter(name = "subgraph", optional = false) String[] subgraph,... |
2432524_5 | public static String prettyPrint( String xml )
{
return prettyPrint( xml, INDENT_NUMBER );
} |
2434719_21 | public boolean contains(int charCode) {
boolean found = false;
for (int i = 0; !found && i < size(); i++) {
CharacterRange range = get(i);
if (range.characterSet != null) {
// Version 1 CGT
found = range.characterSet.contains(String.valueOf((char)charCode));
} els... |
2438993_1 | public String getContextPath() {
return this.contextPath;
} |
2449032_110 | Value not () {
throw newOperandException ("not");
} |
2466190_0 | public static File getEncryptedFilename(File file) {
String filename = file.getName();
return filename.endsWith(ENCRYPTED_FILENAME_SUFFIX) ? file : new File(file.getParent(), filename + ENCRYPTED_FILENAME_SUFFIX);
} |
2470704_0 | protected float normalize(float score, int longestString){
return 1f - (score / longestString);
} |
2474070_1 | public static Gson createGson(Context context)
{
if (gson == null)
{
GsonBuilder builder = new GsonBuilder();
if (context == null || Feature.get(context, R.bool.feature_load_old_experiences).isEnabled())
{
builder.registerTypeAdapterFactory(new ExperienceTypeAdapterFactor());
}
gson = builder.create();
... |
2477847_190 | public MarkupLanguage getMarkupLanguage(final String languageName) throws IllegalArgumentException {
checkArgument(!Strings.isNullOrEmpty(languageName), "Must provide a languageName"); //$NON-NLS-1$
Pattern classNamePattern = Pattern.compile("\\s*([^\\s#]+)?#?.*"); //$NON-NLS-1$
// first try Java services (jar-based... |
2478263_260 | @RequestMapping(value = "/findExternalUrlForStudy/{studyTitle}", method = RequestMethod.GET, produces = "application/json")
@ResponseBody
public String findExternalLinkForStudyWithTitle(HttpServletRequest request, @PathVariable("studyTitle") String taxonName) throws IOException {
return ExternalIdUtil.getUrlFromExt... |
2479886_26 | @Override
public String toString() {
StringBuffer sb = new StringBuffer();
StringBuffer text = new StringBuffer();
byte c;
int len = bb.limit();
int lengthRoundedUpToNextMultipleOf16 = (int) Math.ceil(len / 16.0) * 16;
sb.append("apid: " + getAPID() + "\n");
sb.append("packetId: " + getPacke... |
2485432_0 | public byte[] getNetmaskAddress() {
return netmaskAddress;
} |
2488113_3 | @Override
public LinkableInfo getLinkableInfo(String link) {
LinkableInfo linkableInfo = linkableMapping.get(link);
Validate.notNull(linkableInfo, "Invalid link: " + link);
return linkableInfo;
} |
2488848_139 | public boolean exists(@Nullable ID subject, @Nullable UID predicate, @Nullable NODE object, @Nullable UID context) {
return findStatements(subject, predicate, object, context, false).hasNext();
} |
2491679_4 | @Override
public boolean isValid(String pis, final ConstraintValidatorContext context) {
boolean result = false;
if ( pis == null || "".equals(pis) ) {
result = true;
} else {
result = PISPASEP.isValido(pis);
}
return result;
} |
2497245_83 | @Nonnull
public static SizeValue percent(final int percentage) {
return new SizeValue(percentage, SizeValueType.Percent);
} |
2499324_6 | protected LinkType getLinkType(long linkTypeVal) {
switch ((int)linkTypeVal) {
case 0:
return LinkType.NULL;
case 1:
return LinkType.EN10MB;
case 101:
return LinkType.RAW;
case 108:
return LinkType.LOOP;
case 113:
return LinkType.LINUX_SLL;
}
return null;
} |
2500369_7 | @Override
public void parseArguments(final ParsedArguments parsedArguments, final String... arguments) throws ArgumentValidationException
{
boolean finishedOptions = false;
for (final String argument : arguments)
{
if(finishedOptions)
{
parsedArguments.addValue(argument);
}
... |
2501197_4 | public <T> Set<ConstraintViolation<T>> validateProperty(T object, String propertyPath, Class<?>... groups) {
Set<ConstraintViolation<T>> violations = new HashSet<ConstraintViolation<T>>();
try {
int currentIndex = -1;
String currentPropertyPath;
do {
currentIndex = propert... |
2505794_638 | @Override public boolean evaluate(final T instance) {
return any(predicates, new UnaryPredicate<UnaryPredicate<? super T>>() {
@Override public boolean evaluate(UnaryPredicate<? super T> predicate) {
return predicate.evaluate(instance);
}
});
} |
2510313_7 | @Override
public OngoingReadingWithoutWhere match(PatternElement... pattern) {
return this.match(false, pattern);
} |
2516145_2 | public String[] asArray(String value){
return value.split(",");
} |
2521501_29 | public void confirm(String message, BooleanCallback callback) {
confirm(null, message, callback);
} |
2524488_375 | @Override
public synchronized void fetchColumn(Text colFam, Text colQual) {
checkArgument(colFam != null, "colFam is null");
checkArgument(colQual != null, "colQual is null");
Column c = new Column(TextUtil.getBytes(colFam), TextUtil.getBytes(colQual), null);
fetchedColumns.add(c);
} |
2536041_2 | public static void addJarDirToDistributedCache(Configuration conf, File jarDirectory)
throws IOException {
if (!jarDirectory.exists() || !jarDirectory.isDirectory()) {
throw new IOException("Jar directory: " + jarDirectory.getCanonicalPath() + " does not "
+ "exist or is not a directory.");
}
for (F... |
2544900_7 | public double[] evaluateSchedule(Integer[] jobArray)
{
_schedule = null;
return evaluateSchedule(jobArray, false);
} |
2548552_0 | public void sort(int[] values) {
// Check for empty or null array
if (values ==null || values.length==0){
return;
}
this.numbers = values;
number = values.length;
quicksort(0, number - 1);
} |
2550825_37 | public Map<String, String> getRouterConfigInformation(RouterConfig routerConfig) {
Map<String, String> result = new HashMap<String, String>();
result.put("Router", routerConfig.getClass().getSimpleName());
String routerDispatcher = routerConfig.routerDispatcher();
result.put("Router Dispatcher", routerD... |
2562371_4 | protected void newRule(Class<?> ruleClass, NewRepository repository) {
org.sonar.check.Rule ruleAnnotation = AnnotationUtils.getAnnotation(ruleClass, org.sonar.check.Rule.class);
if (ruleAnnotation == null) {
throw new IllegalArgumentException("No Rule annotation was found on " + ruleClass);
}
String ruleKey = r... |
2562751_4 | static byte[] convertBoolArrayToByteArray(boolean[] boolArr) {
byte[] byteArr = new byte[(boolArr.length + 7) / 8];
for (int i = 0; i < byteArr.length; i++) {
byteArr[i] = readByte(boolArr, 8 * i);
}
return byteArr;
} |
2572668_0 | @Override
public Set<User> searchUsers(UserSearchCriteria criteria) {
final Set<User> users = this.listUsers();
final Set<User> filteredUsers = this.filterListInMemeory(users, criteria);
logger.debug("filteredUsers({}): {}", criteria, filteredUsers);
return filteredUsers;
} |
2573331_1 | private List<String> getUniprotMappings(Model aUpModel) {
QueryExecution ex = QueryExecutionFactory
.create("SELECT ?x WHERE{?x <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Protein>}",
aUpModel);
ResultSet rs = ex.execSelect();
List<String> returnMe = new ArrayList<String>(... |
2576064_42 | public static Map<String, List<CtxModelObject>> sortByObfuscability(List<CtxModelObject> ctxDataList) {
if (null == ctxDataList || ctxDataList.size() <= 0) {
// LOG.error("Can't sort null values");
return null;
}
String notObfuscableType = "NOT_OBFUCSABLE";
DataTypeUtils dataTypeUtils = new DataTypeUtils();
... |
2576181_14 | public void addMethodListener(String regex, RegexMethodInterceptorListener<T> listener) {
if(listener == null) {
throw new IllegalArgumentException("listener cannot be null.");
}
Set<RegexMethodInterceptorListener<T>> set = listeners.get(regex);
if(set == null) {
set = new HashSet<Regex... |
2580771_3 | @Override
protected void doGet( HttpServletRequest req, HttpServletResponse resp )
throws ServletException, IOException
{
// url format = /cache/key so get the key from path
String path = req.getPathInfo();
String servletPath = req.getServletPath();
String key = retrieveKeyFromPath( path );
if ... |
2588654_1 | protected boolean updatePeakForChannel(Network network, Channel channel) {
try {
int storedCount = getCount(network, channel);
int numberCurrentlyOnChannel = channel.getNicks().size();
if (storedCount < numberCurrentlyOnChannel) {
peaks.put(channelIdentifier(network, channel), "... |
2611961_0 | public static String estimateAge(String birthdate) throws ParseException {
Date date = RegistrationUtils.parseDate(birthdate);
return PatientUtils.estimateAge(date);
} |
2613332_20 | @SuppressWarnings("unchecked")
@Override
public DashBoardPage render(RenderTime timer)
{
basicRender(timer);
// We don't know if the dashlets will appear so do the basic rendering
try
{
getDashlet("my-sites").render(timer);
getDashlet("my-documents").render(timer);
getDashlet("ac... |
2614085_60 | @Override
public boolean appliesTo(IPortletDefinition portlet) {
final boolean portletMatch =
portletName.equalsIgnoreCase(portlet.getPortletDescriptorKey().getPortletName());
final boolean webappMatch =
webappName.equalsIgnoreCase(portlet.getPortletDescriptorKey().getWebAppName());
... |
2618757_4 | public Map<String, Schema> getNamedMappings() {
ensureInit();
return nameToSchemaMappings;
} |
2622727_0 | public static HttpRequest get(final CharSequence url)
throws HttpRequestException {
return new HttpRequest(url, METHOD_GET);
} |
2622978_77 | public final void onAfterTestMethod(@Observes(precedence = 45) AfterPersistenceTest event) {
executeCacheEviction(event, TestExecutionPhase.AFTER);
} |
2624179_0 | @Action
void registerConnector( @Nonnull final Connector connector )
{
if ( Replicant.shouldCheckInvariants() )
{
invariant( () -> _connectors.stream()
.noneMatch( e -> e.getConnector().getSchema().getId() == connector.getSchema().getId() ),
() -> "Replicant-0015: Invoked registe... |
2626654_7 | public static String stripAndFillSessionData(final String url, final UrlDataImpl urldata) {
final int pos = url.indexOf(';');
if (pos != -1) {
final char[] data = url.toCharArray();
int sessionStart;
if ((sessionStart = indexOf(data, jsessionLower, pos)) != -1 || (sessionStart = indexOf(data, jsessionUpper, pos... |
2647335_4 | public String forGroup(String groupName, ResourceHtmlTag tag) {
return namePattern
.replace("@groupName@", groupName)
.replace("@extension@", tag.getExtension());
} |
2651891_0 | public String get() {
if (stringList.isEmpty()) {
return null;
} else {
String result = stringList.remove(0);
return result;
}
} |
2656737_4 | public String createConsentCDA(Patient patient,
PatientConsentPolicy policy, DocumentEntry documentEntry) {
// Basic checks
if (patient == null)
throw new IllegalArgumentException("Patient cannot be null.");
if (policy == null)
throw new IllegalArgumentException("policy cannot be null.");
if (documentEntry =... |
2657795_0 | @Override
public MuleEvent process(MuleEvent event) throws MuleException, NullPointerException {
checkNotNull(event, "event");
return getFlow(event.getMuleContext()).process(event);
} |
2666578_179 | @Override
public int hashCode()
{
int hash = 17;
hash = hash * 31 + key.hashCode();
hash = hash * 31 + ( ( value != null ) ? value.hashCode() : 0 );
return hash;
} |
2666662_13 | static CreationFactory createCreationFactory(final String baseURI, final Map<String, Object> pathParameterValues,
final Method method)
throws URISyntaxException {
final Path classPathAnnotation = method.getDeclaringClass().getAnnotation(Path.class);
final OslcCreationFactory creationFactoryAnnotation = method.get... |
2675355_2 | public Node deserializeObject(JsonReader reader) {
Log.info("Deserializing JSON to Node.");
JsonObject jsonObject = reader.readObject();
return deserializeObject(jsonObject);
} |
2675654_37 | public static DependencyAtom getMinimumVersion(DependencyAtom left, DependencyAtom right) {
String leftVersion = left.getPropertyValue();
String rightVersion = right.getPropertyValue();
if ((leftVersion == null) || (rightVersion == null) || leftVersion.equals(rightVersion)) {
return null;
}
... |
2680621_5 | public Widget getWidgetByFieldName(String fieldName) {
for (Map.Entry<Widget, String> e : fieldNames.entrySet()) {
if (e.getValue().equals(fieldName))
return e.getKey();
}
return null;
} |
2681994_39 | @Override
public ClientDetailsEntity saveNewClient(ClientDetailsEntity client) {
if (client.getId() != null) { // if it's not null, it's already been saved, this is an error
throw new IllegalArgumentException("Tried to save a new client with an existing ID: " + client.getId());
}
if (client.getRegisteredRedirectU... |
2685841_1710 | @Override
public void writeJSON(Patient patient, JSONObject json)
{
writeJSON(patient, json, null);
} |
2689039_50 | @Override
public void writeToParcel(Parcel out, int flags) {
super.writeToParcel(out, flags);
out.writeValue(getValue());
} |
2694049_1 | SshServer getServer() {
return server;
} |
2698192_2 | public static String explain(final Throwable throwable) {
checkNotNull(throwable);
StringBuilder buff = new StringBuilder();
explain(buff, throwable);
Throwable cause = throwable;
while ((cause = cause.getCause()) != null) {
buff.append(", caused by: ");
explain(buff, cause);
}
return buff.toSt... |
2708082_94 | public void pushDecision(Decision decision) {
int p = last.get();
decision.setPosition(p);
if(decisions.size() == p){
decisions.add(decision);
}else if(decisions.size() == p + 1) {
decisions.set(p, decision);
}else throw new SolverException("Cannot add decision to decision path");
} |
2708789_0 | @Override
public RepeatStatus execute(StepContribution contribution,
ChunkContext chunkContext) throws Exception {
// why not using println? because it makes testing harder, *nix and
// windows think different about new line as in \n vs \r\n
System.out.print("Hello World!");
... |
2710254_2 | public void loadSettings(String resourcePath, String defaultResourcePath, Object bean) {
try {
Map properties = loadSettings(resourcePath, defaultResourcePath);
BeanUtils.populate(bean, properties);
} catch (IllegalAccessException | InvocationTargetException | IOException e) {
throw new ... |
2719141_12 | public boolean contentEquals( String src, String dest )
throws FileManipulatorException
{
FileObject srcFile = null;
FileObject destFile = null;
try
{
LOGGER.debug( "Comparing the content of {} and {}", src, dest );
srcFile = this.resolveFile( src );
destFile = this.resolveFi... |
2737689_92 | public final PJsonObject toJSON() {
try {
JSONObject json = new JSONObject();
for (String key: this.obj.keySet()) {
Object opt = opt(key);
if (opt instanceof PYamlObject) {
opt = ((PYamlObject) opt).toJSON().getInternalObj();
} else if (opt instanc... |
2740148_425 | @Override
public boolean areOutcomesCompatible(String[] outcomes) {
Set<String> start = new HashSet<>();
Set<String> cont = new HashSet<>();
Set<String> last = new HashSet<>();
Set<String> unit = new HashSet<>();
for (int i = 0; i < outcomes.length; i++) {
String outcome = outcomes[i];
if (outcome.en... |
2740607_0 | public String getDeploymentPath() {
return deployDetails.getArtifactPath();
} |
2742247_3 | public String getCacheName(){
return this.cache.getName();
} |
2747986_8 | public MimeMessage createMessage(String from, String to, String cc,
String subject, SOAPMessage soapMessage) throws ConnectionException {
return createMessage(from, to, cc, subject, soapMessage, createSession());
} |
2752522_464 | public static Connection showDialog(String title) {
return showDialog(title, null);
} |
2755429_1 | public String innerText() {
return sbuf.toString();
} |
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