mmsci-py-059/Dockerfile

# syntax=docker/dockerfile:1.4
# Build this image with:
#   docker build -t mmsci-py-059:latest .
#
# Optional for China-based builds:
#   docker build --build-arg CONDA_MIRROR=tuna -t mmsci-py-059:latest .
#
# Optional strict pip mode:
#   docker build --build-arg PIP_STRICT=1 -t mmsci-py-059:latest .

FROM nvidia/cuda:11.8.0-cudnn8-runtime-ubuntu22.04

ARG ENV_NAME=059_test
ARG CONDA_MIRROR=origin
ARG PIP_STRICT=0

ENV DEBIAN_FRONTEND=noninteractive \
    LANG=C.UTF-8 \
    LC_ALL=C.UTF-8 \
    TZ=Etc/UTC \
    MAMBA_ROOT_PREFIX=/home/miniconda3 \
    CONDA_PREFIX=/home/miniconda3/envs/${ENV_NAME} \
    PIP_NO_CACHE_DIR=1

RUN apt-get update && apt-get install -y --no-install-recommends \
        ca-certificates curl wget git bzip2 build-essential gcc g++ make coreutils \
        libgl1 libglib2.0-0 libsm6 libxext6 libxrender1 libgomp1 \
        libstdc++6 procps less vim-tiny \
    && rm -rf /var/lib/apt/lists/*

RUN curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest \
    | tar -xvj -C /usr/local/bin --strip-components=1 bin/micromamba

COPY explicit.txt /tmp/explicit.txt
RUN set -eux; \
    cp /tmp/explicit.txt /tmp/explicit.active.txt; \
    if [ "$CONDA_MIRROR" = "tuna" ]; then \
      sed -i -E \
        -e 's#https?://conda\.anaconda\.org/conda-forge/#https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/#g' \
        -e 's#https?://conda\.anaconda\.org/bioconda/#https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/#g' \
        -e 's#https?://conda\.anaconda\.org/pytorch/#https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/pytorch/#g' \
        -e 's#https?://conda\.anaconda\.org/nvidia/#https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/nvidia/#g' \
        -e 's#https?://conda\.anaconda\.org/fastai/#https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/fastai/#g' \
        -e 's#https?://conda\.anaconda\.org/rapidsai/#https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/rapidsai/#g' \
        -e 's#https?://repo\.anaconda\.com/pkgs/main/#https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/#g' \
        -e 's#https?://repo\.anaconda\.com/pkgs/r/#https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/r/#g' \
        -e 's#https?://repo\.anaconda\.com/pkgs/msys2/#https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/msys2/#g' \
        /tmp/explicit.active.txt; \
    fi; \
    micromamba create -y -p "$CONDA_PREFIX" --file /tmp/explicit.active.txt; \
    micromamba clean -a -y; \
    rm -f /tmp/explicit.txt /tmp/explicit.active.txt

COPY pip-clean.txt /tmp/pip-clean.txt
RUN set -eux; \
    failed=0; \
    if [ -s /tmp/pip-clean.txt ]; then \
      pip_bin="$CONDA_PREFIX/bin/pip"; \
      grep -vE "^(git\+|.* @ (git\+|https?://(github|raw\.githubusercontent)\.com))" /tmp/pip-clean.txt > /tmp/pip-pypi.txt || true; \
      grep -E "^(git\+|.* @ (git\+|https?://(github|raw\.githubusercontent)\.com))" /tmp/pip-clean.txt > /tmp/pip-git.txt || true; \
      while IFS= read -r line; do \
        [ -n "$line" ] || continue; \
        case "$line" in \#*) continue ;; esac; \
        "$pip_bin" install --no-input --no-deps --ignore-requires-python --prefer-binary "$line" \
          || { echo "pip failed: $line"; failed=$((failed + 1)); }; \
      done < /tmp/pip-pypi.txt; \
      while IFS= read -r line; do \
        [ -n "$line" ] || continue; \
        case "$line" in \#*) continue ;; esac; \
        timeout 300 "$pip_bin" install --no-input --no-deps --ignore-requires-python "$line" \
          || { echo "pip git failed or timed out: $line"; failed=$((failed + 1)); }; \
      done < /tmp/pip-git.txt; \
    fi; \
    if [ "$PIP_STRICT" = "1" ] && [ "$failed" -gt 0 ]; then exit 1; fi; \
    rm -rf /root/.cache/pip /tmp/pip-clean.txt /tmp/pip-pypi.txt /tmp/pip-git.txt

COPY editable.txt /tmp/editable.txt

WORKDIR /workspace

ENV PATH=/home/miniconda3/envs/${ENV_NAME}/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin \
    LD_LIBRARY_PATH=/home/miniconda3/envs/${ENV_NAME}/lib

CMD ["bash", "-lc", "python -V && which python && echo READY: $CONDA_PREFIX"]