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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'options'})
This happened while the csv dataset builder was generating data using
hf://datasets/LuYuxing/MetaBench/Knowledge - metakg_MCQA_dataset.csv (at revision dc8d1b3237be2c84819492257bc5df85f9388d85), [/tmp/hf-datasets-cache/medium/datasets/14230736692882-config-parquet-and-info-LuYuxing-MetaBench-3069f339/hub/datasets--LuYuxing--MetaBench/snapshots/dc8d1b3237be2c84819492257bc5df85f9388d85/Grounding - metabolite_mapping_dataset.csv (origin=hf://datasets/LuYuxing/MetaBench@dc8d1b3237be2c84819492257bc5df85f9388d85/Grounding - metabolite_mapping_dataset.csv), /tmp/hf-datasets-cache/medium/datasets/14230736692882-config-parquet-and-info-LuYuxing-MetaBench-3069f339/hub/datasets--LuYuxing--MetaBench/snapshots/dc8d1b3237be2c84819492257bc5df85f9388d85/Knowledge - metakg_MCQA_dataset.csv (origin=hf://datasets/LuYuxing/MetaBench@dc8d1b3237be2c84819492257bc5df85f9388d85/Knowledge - metakg_MCQA_dataset.csv), /tmp/hf-datasets-cache/medium/datasets/14230736692882-config-parquet-and-info-LuYuxing-MetaBench-3069f339/hub/datasets--LuYuxing--MetaBench/snapshots/dc8d1b3237be2c84819492257bc5df85f9388d85/Reasoning - metakg_triple_extraction_dataset.csv (origin=hf://datasets/LuYuxing/MetaBench@dc8d1b3237be2c84819492257bc5df85f9388d85/Reasoning - metakg_triple_extraction_dataset.csv), /tmp/hf-datasets-cache/medium/datasets/14230736692882-config-parquet-and-info-LuYuxing-MetaBench-3069f339/hub/datasets--LuYuxing--MetaBench/snapshots/dc8d1b3237be2c84819492257bc5df85f9388d85/Research - metabolights_SD_dataset.csv (origin=hf://datasets/LuYuxing/MetaBench@dc8d1b3237be2c84819492257bc5df85f9388d85/Research - metabolights_SD_dataset.csv), /tmp/hf-datasets-cache/medium/datasets/14230736692882-config-parquet-and-info-LuYuxing-MetaBench-3069f339/hub/datasets--LuYuxing--MetaBench/snapshots/dc8d1b3237be2c84819492257bc5df85f9388d85/Understanding - pathbank_QA_dataset.csv (origin=hf://datasets/LuYuxing/MetaBench@dc8d1b3237be2c84819492257bc5df85f9388d85/Understanding - pathbank_QA_dataset.csv)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1893, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2281, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2227, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
question: string
options: string
answer: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 604
to
{'question': Value('string'), 'answer': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
builder.download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 884, in download_and_prepare
self._download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 947, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1739, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1895, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'options'})
This happened while the csv dataset builder was generating data using
hf://datasets/LuYuxing/MetaBench/Knowledge - metakg_MCQA_dataset.csv (at revision dc8d1b3237be2c84819492257bc5df85f9388d85), [/tmp/hf-datasets-cache/medium/datasets/14230736692882-config-parquet-and-info-LuYuxing-MetaBench-3069f339/hub/datasets--LuYuxing--MetaBench/snapshots/dc8d1b3237be2c84819492257bc5df85f9388d85/Grounding - metabolite_mapping_dataset.csv (origin=hf://datasets/LuYuxing/MetaBench@dc8d1b3237be2c84819492257bc5df85f9388d85/Grounding - metabolite_mapping_dataset.csv), /tmp/hf-datasets-cache/medium/datasets/14230736692882-config-parquet-and-info-LuYuxing-MetaBench-3069f339/hub/datasets--LuYuxing--MetaBench/snapshots/dc8d1b3237be2c84819492257bc5df85f9388d85/Knowledge - metakg_MCQA_dataset.csv (origin=hf://datasets/LuYuxing/MetaBench@dc8d1b3237be2c84819492257bc5df85f9388d85/Knowledge - metakg_MCQA_dataset.csv), /tmp/hf-datasets-cache/medium/datasets/14230736692882-config-parquet-and-info-LuYuxing-MetaBench-3069f339/hub/datasets--LuYuxing--MetaBench/snapshots/dc8d1b3237be2c84819492257bc5df85f9388d85/Reasoning - metakg_triple_extraction_dataset.csv (origin=hf://datasets/LuYuxing/MetaBench@dc8d1b3237be2c84819492257bc5df85f9388d85/Reasoning - metakg_triple_extraction_dataset.csv), /tmp/hf-datasets-cache/medium/datasets/14230736692882-config-parquet-and-info-LuYuxing-MetaBench-3069f339/hub/datasets--LuYuxing--MetaBench/snapshots/dc8d1b3237be2c84819492257bc5df85f9388d85/Research - metabolights_SD_dataset.csv (origin=hf://datasets/LuYuxing/MetaBench@dc8d1b3237be2c84819492257bc5df85f9388d85/Research - metabolights_SD_dataset.csv), /tmp/hf-datasets-cache/medium/datasets/14230736692882-config-parquet-and-info-LuYuxing-MetaBench-3069f339/hub/datasets--LuYuxing--MetaBench/snapshots/dc8d1b3237be2c84819492257bc5df85f9388d85/Understanding - pathbank_QA_dataset.csv (origin=hf://datasets/LuYuxing/MetaBench@dc8d1b3237be2c84819492257bc5df85f9388d85/Understanding - pathbank_QA_dataset.csv)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
question string | answer string |
|---|---|
What is the KEGG ID of HMDB ID HMDB0010090? | C00626 |
What is the KEGG ID of HMDB ID HMDB0003417? | C00793 |
What is the KEGG ID of HMDB ID HMDB0008671? | C00157 |
What is the KEGG ID of HMDB ID HMDB0003638? | C01413 |
What is the KEGG ID of HMDB ID HMDB0015321? | C06914 |
What is the KEGG ID of HMDB ID HMDB0015485? | C08117 |
What is the KEGG ID of HMDB ID HMDB0002336? | C08996 |
What is the KEGG ID of HMDB ID HMDB0000699? | C02918 |
What is the KEGG ID of HMDB ID HMDB0029225? | C01327 |
What is the KEGG ID of HMDB ID HMDB0001422? | C01259 |
What is the KEGG ID of HMDB ID HMDB0014487? | C06958 |
What is the KEGG ID of HMDB ID HMDB0030801? | C10482 |
What is the KEGG ID of HMDB ID HMDB0033853? | C10739 |
What is the KEGG ID of HMDB ID HMDB0029981? | C10071 |
What is the KEGG ID of HMDB ID HMDB0009964? | C00626 |
What is the KEGG ID of HMDB ID HMDB0034854? | C11035 |
What is the KEGG ID of HMDB ID HMDB0003081? | C02095 |
What is the KEGG ID of HMDB ID HMDB0015443? | C17725 |
What is the KEGG ID of HMDB ID HMDB0006954? | C06050 |
What is the KEGG ID of HMDB ID HMDB0036467? | C09684 |
What is the KEGG ID of HMDB ID HMDB0013690? | C10238 |
What is the KEGG ID of HMDB ID HMDB0000759? | C02155 |
What is the KEGG ID of HMDB ID HMDB0037209? | C00124 |
What is the KEGG ID of HMDB ID HMDB0002825? | C07480 |
What is the KEGG ID of HMDB ID HMDB0015400? | C07040 |
What is the KEGG ID of HMDB ID HMDB0015168? | C12058 |
What is the KEGG ID of HMDB ID HMDB0007966? | C00157 |
What is the KEGG ID of HMDB ID HMDB0012084? | C00550 |
What is the KEGG ID of HMDB ID HMDB0000943? | C01620 |
What is the KEGG ID of HMDB ID HMDB0004225? | C03771 |
What is the KEGG ID of HMDB ID HMDB0014988? | C07427 |
What is the KEGG ID of HMDB ID HMDB0012113? | C15796 |
What is the KEGG ID of HMDB ID HMDB0000251? | C00245 |
What is the KEGG ID of HMDB ID HMDB0000119? | C00048 |
What is the KEGG ID of HMDB ID HMDB0060677? | C11004 |
What is the KEGG ID of HMDB ID HMDB0060681? | C16570 |
What is the KEGG ID of HMDB ID HMDB0014587? | C11153 |
What is the KEGG ID of HMDB ID HMDB0004979? | C01190 |
What is the KEGG ID of HMDB ID HMDB0010351? | C05643 |
What is the KEGG ID of HMDB ID HMDB0005406? | C00422 |
What is the KEGG ID of HMDB ID HMDB0035772? | C08773 |
What is the KEGG ID of HMDB ID HMDB0032706? | C18750 |
What is the KEGG ID of HMDB ID HMDB0013860? | C06754 |
What is the KEGG ID of HMDB ID HMDB0032584? | C14231 |
What is the KEGG ID of HMDB ID HMDB0004236? | C05954 |
What is the KEGG ID of HMDB ID HMDB0005010? | C07246 |
What is the KEGG ID of HMDB ID HMDB0001552? | C00940 |
What is the KEGG ID of HMDB ID HMDB0032582? | C02499 |
What is the KEGG ID of HMDB ID HMDB0002290? | C06269 |
What is the KEGG ID of HMDB ID HMDB0015339? | C07662 |
What is the KEGG ID of HMDB ID HMDB0030819? | C09263 |
What is the KEGG ID of HMDB ID HMDB0000252? | C00319 |
What is the KEGG ID of HMDB ID HMDB0000464? | C00076 |
What is the KEGG ID of HMDB ID HMDB0004437? | C06772 |
What is the KEGG ID of HMDB ID HMDB0029915? | C06353 |
What is the KEGG ID of HMDB ID HMDB0036599? | C08486 |
What is the KEGG ID of HMDB ID HMDB0000691? | C00383 |
What is the KEGG ID of HMDB ID HMDB0000956? | C00898 |
What is the KEGG ID of HMDB ID HMDB0011718? | C00633 |
What is the KEGG ID of HMDB ID HMDB0000143? | C00984 |
What is the KEGG ID of HMDB ID HMDB0014262? | C07306 |
What is the KEGG ID of HMDB ID HMDB0008775? | C00157 |
What is the KEGG ID of HMDB ID HMDB0034244? | C06323 |
What is the KEGG ID of HMDB ID HMDB0002536? | C17661 |
What is the KEGG ID of HMDB ID HMDB0015027? | C08090 |
What is the KEGG ID of HMDB ID HMDB0001441? | C05649 |
What is the KEGG ID of HMDB ID HMDB0036748? | C18015 |
What is the KEGG ID of HMDB ID HMDB0002786? | C00088 |
What is the KEGG ID of HMDB ID HMDB0000484? | C06672 |
What is the KEGG ID of HMDB ID HMDB0033762? | C10048 |
What is the KEGG ID of HMDB ID HMDB0014538? | C07813 |
What is the KEGG ID of HMDB ID HMDB0003667? | C02759 |
What is the KEGG ID of HMDB ID HMDB0001247? | C06264 |
What is the KEGG ID of HMDB ID HMDB0003571? | C01832 |
What is the KEGG ID of HMDB ID HMDB0001164? | C04221 |
What is the KEGG ID of HMDB ID HMDB0000265? | C02465 |
What is the KEGG ID of HMDB ID HMDB0037922? | C05229 |
What is the KEGG ID of HMDB ID HMDB0001377? | C00007 |
What is the KEGG ID of HMDB ID HMDB0000060? | C00164 |
What is the KEGG ID of HMDB ID HMDB0001361? | C00237 |
What is the KEGG ID of HMDB ID HMDB0038406? | C08411 |
What is the KEGG ID of HMDB ID HMDB0036763? | C11876 |
What is the KEGG ID of HMDB ID HMDB0030684? | C08604 |
What is the KEGG ID of HMDB ID HMDB0014677? | C05349 |
What is the KEGG ID of HMDB ID HMDB0001469? | C03543 |
What is the KEGG ID of HMDB ID HMDB0014763? | C08088 |
What is the KEGG ID of HMDB ID HMDB0006355? | C02670 |
What is the KEGG ID of HMDB ID HMDB0000549? | C01770 |
What is the KEGG ID of HMDB ID HMDB0005781? | C14536 |
What is the KEGG ID of HMDB ID HMDB0003020? | C13431 |
What is the KEGG ID of HMDB ID HMDB0014580? | C07758 |
What is the KEGG ID of HMDB ID HMDB0002061? | C00518 |
What is the KEGG ID of HMDB ID HMDB0000134? | C00122 |
What is the KEGG ID of HMDB ID HMDB0030459? | C08308 |
What is the KEGG ID of HMDB ID HMDB0005796? | C17055 |
What is the KEGG ID of HMDB ID HMDB0030820? | C09264 |
What is the KEGG ID of HMDB ID HMDB0033963? | C07600 |
What is the KEGG ID of HMDB ID HMDB0059899? | C14395 |
What is the KEGG ID of HMDB ID HMDB0062370? | C11421 |
What is the KEGG ID of HMDB ID HMDB0005017? | C11806 |
End of preview.
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